WebJul 27, 2024 · It happens frequently, but not always, looks like it's more likely to happen if I run multiple programs working with multiple HDF5 files (each with it's own) at the same … WebThe below example is sufficient to reproduce the problem with h5py-2.6.0. The difference between triggering the problem and not (apart from the aforementioned libver='latest') is the number of attributes: 544 will trigger, 543 will not.
Re: [netcdfgroup] [PossibleSpam][3.6] Re: netcdf fortran error - HDF5 …
WebFeb 9, 2024 · (with latest version of HDF5 and NetCDF libraries I get only "ncdump: toto.nc: NetCDF: HDF error") and it seems very weird because if I comment one of the lines … WebDec 15, 2015 · This happens while closing the h5 file. As far as I understand two ranks succeded in closing and two of them detected this "infinite loop". So I tried to call … scentsy lyric warmer
HDF5: infinite loop closing library - HDF5 - HDF Forum
WebOct 21, 2024 · First, to rule out Snakemake as an issue, did you try to simply load the pre-trained model in a Python shell? For example, does this throw the same error? $ python -c "from stardist.models import StarDist2D; StarDist2D.from_pretrained('2D_versatile_fluo')" If that's the case, then I'd try to use a different/newer version of the HDF5 library h5py . WebJul 9, 2024 · It is often recommended when writing to or from files (using any file constructor, not just h5py) to use the with statement. For example with h5py.File ('myfile.hdf5', 'w') as f:. This makes it so that you don't have to explicitly close the file. On the other hand, it makes it difficult to debug file I/O interactively. WebTo build an HDF5 library with the 1.10 APIs you must set DEFAULT_API_VERSION to v110 when configuring. For example, with autotools specify --with-default-api-version=v110 and with CMake set -DDEFAULT_API_VERSION:STRING=v110 in the HDF5options.cmake file when using the CMake source release ( CMake-hdf5-1.12.0* ). scentsy lychee sorbet