WebHiC-Pro/bin/utils/hicpro2fithic.py. # Modified by Ferhat Ay - 6/5/2024 - added resolution (-r ) argument to avoid some problems with inferring it from the first entry of bedFile. … WebNov 1, 2024 · Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome conformation capture …
HiCPro分析流程及结果解读 - BPSO_mynotes - 博客园
WebJun 9, 2024 · FitHiC is highly sensitive (a good and a bad thing) so it should be capturing anything with an enrichment. One reason I can think of is the loci involved in those loops are filtered out due to bias values or other things. Web使用juicer_tools工具进行下游分析; 目前针对Hi-C数据的研究主要是三个方面,分别是A/B comparment ,TADS,Loops。. juicer_tools.jar 功能介绍. arrowhead 注释TAD. hiccups 注释loop. motigs 定位CTCF元件. hiccupsdiff 从多个loos文件中找到不同的loop. apa 聚合峰的分析. pearsons 计算O/E的皮尔森相关系数. eigenvector 计算特征向量的 ... how long ago was january 23rd 2020
GitHub - RuyuTan/FitHiC: Fit-Hi-C is a tool for assigning statistica…
WebMay 24, 2024 · FitHiC V1主要用于识别中程顺式互作处理Hi-C数据,最自然的分辨率划分方法是基于限制性内切酶切出来的酶切片段,即一个酶切片段为一个最小单位。但是,因为测序深度和基因组上感兴起的size不同,例如有的研究关注TAD结构,有的研究关注Loops结构,所以目前要么按固定大小对基因组划分bin,要么 ... WebDec 13, 2024 · Hi-C数据的标准处理流程主要包括:序列比对、数据过滤、数据Binning(将数据分成小单元)和数据校正。. 将测序得到的Hi-C双端序列与参考序列比对,仅双端均唯一匹配到参考序列上的paired reads(valid pairs)才能用于后续分析,最后再将valid pair序列去除PCR冗余后 ... WebJan 24, 2024 · conda install fithic After doing so, ensure that your version is the most up-to-date version of FitHiC2 by cross-referencing the output of the following command to the one stated on GitHub: fithic ... how long ago was january 1st 2023